Publications

Mirzaee H, Ariens E, Blaskovich MAT, Clark RJ, Schenk PM (2021) Biostimulation of bacteria in liquid culture for identification of new antimicrobial compounds. Pharmaceuticals 14:1232.

Schenk PM (2021) Phycology: Algae for Food, Feed, Fuel and the Planet. Phycology 1:76-78.

Shekh A, Sharma A, Schenk PM, Kumar G, Mudliar S (2021) Microalgae cultivation: photobioreactors, CO₂ utilization, and value‐added products of industrial importance. Journal of Chemical Technology & Biotechnology, https://doi.org/10.1002/jctb.6902.

Laraib N, Hussain A, Javid A, Noor T, Ahmad Q, Chaudhary A, Manzoor M, Akmal M, Bukhari SM, Ali W, Choi TJ, Schenk PM (2021) Recent trends in microalgal harvesting: an overview. Environment, Development and Sustainability, https://doi.org/10.1007/s10668-021-01805-2.

Syed‑Ab‑Rahman, SF, Chua ET, Schenk PM (2021) Characterisation and isolation of bioactive compounds of anti‑oomycete bacterial isolates inhibiting the growth of Phytophthora capsica. Australasian Plant Pathology 50:651–659.

Lee CH, Hawker NP, Peters JR, Lonhienne TGA, Gursanscky NR, Matthew L, Brosnan CA, Mann CWG, Cromer L, Taochy C, Ngo QA, Sundaresan V, Schenk PM, Kobe B, Borges F, Mercier R, Bowman JL, Carroll BJ (2021) Defective Embryo and Meristems genes are required for cell division and gamete viability in Arabidopsis. PLoS Genetics 17:e1009561.

Weisany W, Schenk PM, Struik PC (2021) Coriander/soybean intercropping and mycorrhizae application lead to overyielding and improved essential oil profiles. European Journal of Agronomy 126:126283.

Cui Y, Thomas-Hall SR, Chua ET, Schenk PM (2021) Development of a Phaeodactylum tricornutum biorefinery to sustainably produce omega-3 fatty acids and protein. Journal of Cleaner Production 300:126839.

Mirzaee H, Neira Peralta NL, Carvalhais LC, Dennis PG, Schenk PM (2021) Plant-produced bacteriocins inhibit plant pathogens and confer disease resistance in tomato. New Biotechnology 63:54-61.

Correa DF, Beyer HL, Possingham HP, Fargione JE, Hill JD, Schenk PM (2021) Microalgal biofuel production at national scales: reducing conflicts with agricultural lands and biodiversity within countries. Energy 215:119033.

González-González LM, Astals S, Pratt S, Jensen PD, Schenk PM (2021) Osmotic shock pre-treatment of Chaetoceros muelleri wet biomass enhanced solvent-free lipid extraction and biogas production. Algal Research 54:102177

Khalediyan N, Weisany W, Schenk PM (2021) Arbuscular mycorrhizae and rhizobacteria improve growth, nutritional status and essential oil production in Ocimum basilicum and Satureja hortensis. Industrial Crops and Products 113163

Liu H, Li J, Carvalhais L, Percy C, Verma J, Schenk PM, Singh B (2021) Evidence for the plant recruitment of beneficial microbes to suppress soil-borne pathogen. New Phytologist 229:2873-2885.

Yi C, Thomas-Hall SR, Chua ET, Schenk PM (2021) Development of high-level omega-3 eicosapentaenoic acid (EPA) production from Phaeodactylum tricornutum microalgae. Journal of Phycology 57:258-268.

Ajam Shekh, Peer Schenk and R. Sarada (2021) Microalgal Biotechnology: Recent Advances, Market Potential, and Sustainability. Royal Society of Chemistry, London.

Ji X, Webster L, Wass T, Schenk PM (2021) Cultivation techniques to induce high-value nutraceuticals in microalgae. IN: Algal Functional Foods and Nutraceuticals: Benefits, Opportunity and Challenges. A. Mishra (ed). Bentham Science Publishers.

Wilson J, Ahmad Termizi AA, Chua ET, Schenk PM (2021) Bioprocessing of microalgal protein and their applications in the cosmetic, nutraceutical and food industries. IN: Seaweed and microalgae as alternative sources of protein. X. Lei (Ed.). Burleigh Dodds Science Publishing.

Webster LJ, Ji X, Schenk PM (2021) Microalgae as a sustainable source of vegan protein and omega-3 fatty acids. IN: Algal Functional Foods and Nutraceuticals: Benefits, Opportunity and Challenges. A. Mishra (ed). Bentham Science Publishers.

Dart P, Shao Z, Schenk PM (2021) Biopesticide commercialization in Australia: potential and challenges. IN: Development and commercialization of biopesticides: costs and benefits. O. Koul (ed.). Elsevier.

Shao Z, Dart P, Schenk PM (2021) Microbial biostimulants in protecting against leaf pathogens, IN: Microbial biostimulants sustainable agriculture and environmental bioremediation. Inamuddin, M. I. Ahamed, C. O. Adetunji T. A. Altalhi (eds.). CRC Press Taylor & Francis.

Singh E, Schenk PM, Carvalhais LC (2021) Sample preparation for culture-independent profiling and isolation of phyllosphere bacteria to identify potential biopesticides. IN: The Plant Microbiome: Methods and Protocols. L.C. Carvalhais, P. Dennis (eds). Springer.

Wass TJ, Brown RB, Shekh AY, Schenk PM (2021) Microalgae strain improvement and genetic engineering for enhanced biomass and metabolite yields. IN: Algae for Food: Cultivation, Processing and Nutritional Benefits.  R. Raja, S. Hemaiswarya, K. Arunkumar, I.S. Carvalho (eds). CRC Press.

Alsenani F, Tupally K, Chua E, Eltanahy E, Alsufyani H, Parekh H, Schenk PM (2020) Evaluation of microalgae and cyanobacteria as potential sources of antimicrobial compounds. Saudi Pharmaceutical Journal 28:1834-1841.

Cui Y, Thomas-Hall SR, Schenk PM (2020) Isolation and cultivation of a Phaeodactylum tricornutum strain from the East coast of Australia for EPA production. Geology, Earth and Marine Sciences 2:1-7.

Chua ET, Dal’Molin C, Thomas-Hall S, Netzel M, Netzel G, Schenk PM (2020) Cold and dark treatments induce omega-3 fatty acid and carotenoid production in Nannochloropsis oceanica. Algal Research 51:102059.

Liu H, Li J, Cavalhais LC, Percy C, Verma JP, Schenk PM, Singh B (2020). Evidence for the plant recruitment of beneficial microbes to suppress soil-borne pathogen.  bioRxiv https://doi.org/10.1101/2020.07.31.231886

Liu B, Eltanahy EE, Liu H, Chua E, Thomas-Hall S, Wass T, Pan K, Schenk PM (2020) Growth-promoting bacteria double eicosapentanoic acid yield in microalgae. Bioresource Technology 316:123916.

Manzoor M, Jabeen F, Ahmad Q, Younis T, Hussain A, Eltanahy E, Schenk PM (2020) Sugarcane bagasse hydrolysate as organic carbon substrate for mixotrophic cultivation of Nannochloropsis sp. BR2. Waste and Biomass Valorization 12:2321-2331.

Chua ET, Shekh AY, Eltanahy E, Thomas-Hall SR, Schenk PM (2020) Effective harvesting of Nannochloropsis microalgae using mushroom chitosan: a pilot-scale study. Frontiers in Bioengineering and Biotechnology 8:771.

Arif I, Batool M, Schenk PM (2020) Plant microbiome engineering: Expected benefits for improved crop growth and resilience. Trends in Biotechnology. 38:1385-1396

Correa DF, Beyer HL, Possingham HP, García-Ulloa J, Ghazoul J, Schenk PM (2020) Freeing land from biofuel production through microalgal cultivation in the Neotropical region. Environmental Research Letters 15:094094.

Rincon-Florez VA, Carvalhais LC, Schenk PM, Dennis PG (2020) Significant effects on soil microbial communities were not detected after strategic tillage following 44 years of conventional or no-tillage management. Pedobiologia 80:150640.

Hussein NK, Sabr LJ, Lobo E, Booth J, Ariens E, Detchanamurthy S, Schenk PM (2020) Suppression of Arabidopsis Mediator subunit-encoding MED18 confers broad resistance against DNA and RNA viruses while MED25 is required for virus defense. Frontiers in Plant Science 11:162.

Brown RB, Wass TJ, Thomas-Hall SR, Schenk PM (2020) Synthetic biology tools for microalgae. IN: Marine Niche: Applications in Pharmaceutical Sciences - Translational Research. Chandra Shekar (ed). Springer Nature Publishing.

Liang Y, Schenk PM (2020) Biomass production from marine microalgae: Introducing a biorefinery concept for Nannochloropsis sp. IN: Encyclopedia of Marine Biotechnology: Five Volume Set, First Edition. S.-K. Kim (ed). Wiley & Sons.

Chua E, Alsenani F, Ma R, Schenk PM (2020) Production of high-value metabolites from microalgae. IN: Microalgal Biotechnology: Recent Advances, Market Potential, and Sustainability. A. Shekh, P. Schenk, R. Sarada (eds). Royal Society of Chemistry, London.

Liu H, Khan M, Carvalhais L, Delgado-Baquerizo M, Yan L, Crawford M, Dennis P, Singh B, Schenk PM (2019): Soil amendments with ethylene precursor alleviate negative impacts of salinity on soil microbial properties and productivity. Scientific Reports 9:6892.

Aslam A, Thomas-Hall SR , Mughal T , Zamana Q, Ehsana N, Javieda S, Schenk PM (2019): Heavy metal bioremediation of coal-fired flue gas using microalgae under different CO2 concentrations. Journal of Environmental Management 241:243-250.

Wass TJ, Syed-Ab-Rahman SF, Carvalhais LC, Ferguson B, Schenk PM (2019): Complete genome sequence of Achromobacter spanius UQ283, a soil-borne isolate exhibiting plant growth promoting properties. Microbiology Resource Announcements 8:e00236-19.

Correa DF, Beyer HL, Fargione JE, Hill JD, Possingham HP, Thomas-Hall SR, Schenk PM (2019): Towards the implementation of sustainable biofuel production systems. Renewable & Sustainable Energy Reviews 107:250-263.

Liu D, Edraki M, Malekizadeh A, Schenk PM, Berry L (2019): Introducing the hydrate gel membrane technology for filtration of mine tailings. Minerals Engineering 135:1-8.

Alsenani F, Wass TJ, Ma R, Eltanahy E, Netzel ME, Schenk PM (2019): Transcriptome-wide analysis of Chlorella reveals auxin-induced carotenogenesis pathway in green microalgae. Algal Research 37:320-335.

Syed-Ab-Rahman SF, Xiao Y, Carvalhais LC, Ferguson BJ, Schenk PM (2019): Suppression of Phytophthora capsici infection and promotion of tomato growth by soil bacteria. Rhizosphere 9:72-75.

Carvalhais LC, Rincon-Florez VA, Beveridge CA, Brewer PB, Dennis PG, Schenk PM (2019): The ability of plants to produce strigolactones affects rhizosphere community composition of fungi but not bacteria. Rhizosphere 9:18-26.

Chua ET, Eltanahy E, Jung H, Uy M, Thomas-Hall SR, Schenk PM (2019): Efficient harvesting of Nannochloropsis microalgae via optimized chitosan-mediated flocculation. Global Challenges 3:1800038.

Correa DF, Beyer HL, Possingham HP, Thomas-Hall SR, Schenk PM (2019): Global mapping of cost-effective microalgal biofuel production areas with minimal environmental impact. Global Change Biology (accepted).

González-González LM, Eltanahy E, Schenk PM (2019) Assessing the fertilizing potential of microalgaldigestates using the marine diatom Chaetoceros muelleri. Algal Research (accepted 1 May 2019)

González-González LM, Astals S, Pratt S, Jensen PD, Schenk PM (2019): Impact of osmotic shock pre-treatment on microalgae lipid extraction and subsequent methane production. Bioresource Technology Reports (accepted).

Manzoor M, Jabeen F, Thomas-Hall SR, Altaf J, Younis T, Schenk PM, Qazi JI (2019): Sugarcane bagasse as a novel low/no cost organic carbon source for growth of Chlorella sp. BR2. Biofuels (accepted).

Chua ET, Brunner M, Atkin R, Eltanahy E, Thomas-Hall SR, Schenk PM (2018): The ionic liquid cholinium arginate is an efficient solvent for extracting high-value Nannochloropsis sp. lipids. ACS Sustainable Chemistry & Engineering7:2538-2544.

Syed-Ab-Rahman SF, Carvalhais LC, Schenk PM (2018): Identification of soil bacterial isolates suppressing different Phytophthora spp. and promoting plant growth. Frontiers in Plant Science 9:1502.

Ma R, Thomas-Hall SR, Chua ET, Eltanahy E, Netzel ME, Netzel G, Lu Y, Schenk PM (2018): Blue light enhances astaxanthin biosynthesis metabolism and extraction efficiency in Haematococcus pluvialis by inducing haematocyst germination. Algal Research 35:215-222.

Liu H, Carvalhais LC, Schenk PM, Dennis PG (2018): Activation of the salicylic acid signalling pathway in wheat had no significant short-term impact on the diversity of root-associated microbiomes in different soils. Pedobiologia 70:6-11.

González-González LM, Zhou L, Astals S, Thomas-Hall SR, Eltanahy E, Pratt S, Jensen PD, Schenk PM(2018): Biogas production coupled to repeat microalgae cultivation using a closed nutrient loop. Bioresource Technology 263:625-630.

Moyle R, Pretorius L, Shuey L, Nowak E, Schenk PM (2018): Analysis of the complete genome sequence of Cucumber mosaic virus strain K. Genome Announcements 6:e00053-18.

Aslam A, Thomas-Hall SR, Manzoor M, Jabeen F, Iqbal M, uz Zaman Q, Schenk PM, Tahir MA (2018): Mixed microalgae consortia growth under higher concentration of CO2 from unfiltered coal fired flue gas: Fatty acid profiling and biodiesel production. Journal of Photochemistry and Photobiology B: Biology 179:126-133.

González-González L, Correa DF, Stephen R, Jensen P, Pratt S, Schenk PM (2018): Integrated biodiesel and biogas production from microalgae: Towards a sustainable closed loop through nutrient recycling. Renewable & Sustainable Energy Reviews82:1137-1148.

Ma R, Thomas-Hall SR, Chua ET, Alsenani F, Eltanahy E, Netzel ME, Netzel G, Lu Y, Schenk PM (2018): Gene expression profiling of astaxanthin and fatty acid pathways in Haematococcus pluvialis in response to different LED lighting conditions. Bioresource Technology 250:591–602.

Ma R, Thomas-Hall SR, Chua ET, Eltanahy E, Netzel ME, Netzel G, Lu Y, Schenk PM (2018): LED power efficiency of biomass, fatty acid, and carotenoid production in Nannochloropsis microalgae. Bioresource Technology 252:118-126.

Syed Ab Rahman SF, Singh E, Pieterse CMJ, Schenk PM (2018): Emerging microbial biocontrol strategies for plant pathogens. Plant Science 267: 102–111.

Dang YP, Balzer A, Crawford M, Rincon-Florez V, Liu H, Melland A, Antille DL, Kodur S, Bell M, Whish J, Lai Y, Seymour N, Carvalhais LC, Schenk PM (2018): Strategic tillage in conservation agricultural systems of north-eastern Australia: why, where, when and how?. Environmental Science and Pollution Research 25:1000-1015.

Trivedi, P., Schenk, P.M., Wallenstein, M.D. and Singh, B.K., 2017. Tiny Microbes, Big Yields: enhancing food crop production with biological solutions. Microbial Biotechnology, 10(5), pp.999-1003.

Malekizadeh A, Schenk PM(2017): High flux water purification using aluminium hydroxide hydrate gels. Scientific Reports7:17437.

Liu H, Carvalhais LC, Crawford M, Singh E, Dennis P, Pieterse CMJ, Schenk PM (2017): Inner plant values: diversity, colonization and benefits from endophytic bacteria. Frontiers in Microbiology8:2552.

Moyle RL, Pretorius L, Carvalhais LC, Schenk PM (2017): Complete nucleotide sequence of Australian Tomato spotted wilt virus isolate TSWV-QLD2. Genome Announcements5:e01267-17.

González-González L, Correa DF, Stephen R, Jensen P, Pratt S, Schenk PM (2017) Integrated biodiesel and biogas production from microalgae: Towards a sustainable closed loop through nutrient recycling. Renewable & Sustainable Energy Reviews doi.org/10.1016/j.rser.2017.09.091

First fully sequenced genome of an Australian isolate of Cauliflower mosaic virus. Australasian Plant Pathology 46:597-599.

Moyle R, Carvalhais LC, Pretorius LS, Nowak E, Subramaniam G, Dalton-Morgan J, Schenk PM (2017) An optimised transient dual luciferase assay for quantifying microRNA directed repression of targeted sequences. Frontiers in Plant Science doi: 10.3389/fpls.2017.01631

Lim DKY, Schuhmann H, Thomas-Hall SR, Chan KCK, Wass TJ, Aguilera F, Adarme-Vega TC, Dal’Molin CGO, Thorpe GJ, Batley J, Edwards D, Schenk PM (2017) RNA-Seq and metabolic flux analysis of Tetraselmis sp. M8 during nitrogen starvation reveals a two-stage lipid accumulation mechanism. Bioresource Technology doi.org/10.1016/j.biortech.2017.06.003

Chua ET, Schenk PM (2017) A biorefinery for Nannochloropsis: induction, harvesting, and extraction of EPA-rich oil and high-value protein. Bioresource Technology doi.org/10.1016/j.biortech.2017.05.124

Davoine C, Abreu I, Khajeh K, Blomberg J, Kidd B, Kazan K, Schenk PM, Gerber L, Nilsson O, Moritz T, Björklund S (2017) Functional metabolomics as a tool to analyze Mediator function and structure in plants. PLoS ONE doi.10.1371/journal.pone.0176022

Ahmed F, Schenk PM (2017) UV-C radiation increases sterol production in the microalga Pavlova lutheri. Phytochemistry 139:25-32.

Liu H, Carvalhais LC, Schenk PM, Dennis PG (2017) Effects of jasmonic acid signalling on the wheat microbiome differ between body sites. Scientific Reports 7:41766.

Aslam A, Mughal TA, Thomas-Hall SR, Schenk PM, Pervaiz S (2017) Protein quantification of mixed microalgae consortia under different concentration of coal fired flue gas. International Journal of Biosciences 10:72-80.

Correa DF, Beyer H, Possingham H, Thomas-Hall SR, Schenk PM (2017) Biodiversity impacts of bioenergy production: Microalgae vs. first generation biofuels. Renewable & Sustainable Energy Reviews 74:1131-1146

Lim DKY, Schenk PM (2017) Microalgae selection and improvement as oil crops: GM vs non-GM metabolic strain engineering. AIMS Bioengineering. 4:151-161.

Liu H, Mirzaee H, Rincon-Florez V, Moyle R, Spohn M, Carvalhais LC, Schenk PM (2017) Emerging culture-independent tools to enhance our understanding for soil microbial ecology. IN: Microbial biomass - a new paradigm in terrestrial biogeochemistry. K. Tate (ed). Imperial College Press.

Aslam A, Thomas-Hall SR, Mughal TA, Schenk PM (2017) Selection and adaptation of microalgae to growth in 100% unfiltered coal-fired flue gas. Bioresource Technology 233:271-283.

Pretorius LS, Hussein N, Al-Amery A, Moyle RL, Schenk PM (2017) Natural and engineered defenses against plant viruses. Current Biotechnology 6:339-348.

Carvalhais LC, Schenk PM, Dennis PG (2017) Jasmonic acid signalling and the plant holobiont. Current Opinion in Microbiology 37:42-47.

Dang YP, Balzer A, Crawford M, Rincon-Florez V, Liu H, Melland A, Antille DL, Kodur S, Bell M, Whish J, Lai Y, Seymour N, Carvalhais LC, Schenk PM (2017) Strategic tillage in conservation agricultural systems of north-eastern Australia: why, where, when and how? Environmental Science and Pollution Research 10.1007/s11356-017-8937-1

Fallath T, Kidd BN, Stiller J, Björklund S, Manners JM, Kazan K, Schenk PM (2017)
MEDIATOR18 and MEDIATOR20 confer susceptibility to Fusarium oxysporum in Arabidopsis thaliana.PLoS ONE 12:e0176022

Liu H, Carvalhais LC, Crawford M, Dang YP, Dennis PG, Schenk PM (2016): Strategic tillage increased the relative abundance of Acidobacteria but did not impact on overall soil microbial properties of a 19-year no-till Solonetz. Biology and Fertility of Soils 52:1021-1035.

Narala RR, Garg S, Sharma KK, Thomas-Hall SR, Deme M, Li Y, Schenk PM (2016): Comparison of microalgae cultivation in photobioreactor, open raceway pond, and a two-stage hybrid system. Frontiers in Energy Research 4:29.

Ghasemi Naghdi F, Schenk PM (2016): Dissolved air flotation and centrifugation as methods for oil recovery from ruptured microalgal cells. Bioresource Technology 218:428-435.

Yan L, Schenk PM, Qin J(2016) The path forward of microalgal biotechnology for sustainable aquaculture development.Current Biotechnology 5:289-295.

Liu H, Carvalhais LC, Kazan K, Schenk PM (2016) Development of marker genes for jasmonic acid signaling in shoots and roots of wheat. Plant Signaling & Behavior 11:e1176654.

Ghasemi Naghdi F, Lina M González González LM, Chan W, SchenkPM (2016) Progress on lipid extraction from wet algal biomass for biodiesel production. Microbial Biotechnology 9:718-726

Rincon-Florez VA, Ng C, Dang YP, Schenk PM, Carvalhais LC (2016) Short-term impact of an occasional tillage on microbial communities in a Vertisol after 43 years of no-tillage or conventional tillage. European Journal of Soil Biology 74:32-38.

Sewelam N, Kazan K, Schenk PM (2016) Global plant stress signaling: reactive oxygen species at the cross-road. Frontiers in Plant Science 7:187.

Rincon-Florez VA, Crawford MH, Dang YP, Schenk PM, Carvalhais LC (2016) Occasional tillage has no effect on soil microbial biomass, activity and composition in vertisols under long-term no-till. Biology and Fertility of Soils 52:191-202.

Liu H, Crawford M, Carvalhais LC Dang YP, Dennis P, Schenk PM (2016) Strategic tillage on a Grey Vertosol after fifteen years of no-till management had no short-term impact on soil properties and agronomic productivity. Geoderma 267:146-155.

Liu H, Carvalhais LC, Rincon-Florez V, Crawford M, Dang YP, Dennis P, Schenk PM (2016) One-time strategic tillage does not cause major impacts on soil microbial properties in a no-till Calcisol. Soil and Tillage Research 158:91-99.

Liu H, Mirzaee H, Rincon-Florez V, Moyle R, Spohn M, Carvalhais LC, Schenk PM (2016) Emerging culture-independent tools to enhance our understanding for soil microbial ecology IN:Microbial biomass - a new paradigm in terrestrial biogeochemistry. K. Tate (ed). Imperial College Press

Ghasemi Naghdi F, Bai X, Thomas-Hall SR, Sharma K, Schenk PM (2016) Lipid extraction from wet Chaetoceros muelleri culture and evaluation of remaining defatted biomass. Algal Research 20:205-212.

Pretorius L, Moyle R, Dalton-Morgan J, Hussein N, Schenk PM (2016) Complete nucleotide sequence of an Australian isolate of Turnip mosaic virus before and after seven years of serial passaging. Genome Announcements 4:e01269-16.

Moyle R, Pretorius LS, Dalton-Morgan J, Persley D, Schenk PM (2016) Analysis of the first complete genome sequence of an Australian tomato spotted wilt virus isolate. Australasian Plant Pathology 45:509-512.

Fallath T, Bin Rosli A, Kidd B, Carvalhais LC, Schenk PM (2016) Towards plant defense mechanisms against root pathogens. IN: Agriculturally important microbes for sustainable agriculture. V.S. Meena, P.K. Mishra, D. Thakuria, J.K. Bisht, A. Pattanayak (eds). Springer.

Walsh B, Rydzak F, Palazzo A, Kraxner F, Herrero M,Schenk PM, Ciais P, Janssens IA, Peñuelas J,Niederl-Schmidinger A, Obersteiner M (2015) New feed sources key to ambitious climate targets. Carbon Balance and Management 10:1-9

Garg S, Wang L, Schenk PM (2015) Flotation separation of marine microalgae from aqueous medium. Separation and Purification Technology 156:636-641.

Ahmed F, Fanning K, Netzel M, Schenk PM (2015) Induced carotenoid accumulation in Dunaliellasalina and Tetraselmissuecica by plant hormones and UV-C radiation. Applied Microbiology and Biotechnology 99:9407-9416.

Sharma KK, Li Y, Schenk PM (2015) Rapid lipid induction in Chlorella sp. by UV-C radiation. Bioenergy Research 8:1824-1830.

Carvalhais LC, Dennis PG, Badri DV, Kidd BN, Vivanco JM, Schenk PM (2015) Linking jasmonic acid signalling, root exudates and rhizosphere microbiomes. Molecular Plant-Microbe Interactions 28:1049-1058.

Ahmed, F, Zhou W, Schenk PM (2015) Pavlova lutheri is a high-level producer of phytosterols. Algal Research 10:210-217.

Bai X, Schenk PM, Yuan Z, Lant PA, Pratt S (2015) Enhanced triacylglyceride extraction from microalgae using free nitrous acid pre-treatment. Applied Energy 154:183-189

Ahmed F, Li Y, Fanning K, Netzel M, Schenk PM (2015) Effect of drying, storage temperature and air exposure on astaxanthin stability from Haematococcuspluvialis. Food Research International 74:231–236.

Duong VT, Thomas-Hall SR, Schenk PM (2015) Growth and lipid accumulation of microalgae from fluctuating brackish and sea water locations in South East Queensland – Australia. Frontiers in Plant Science 6:359.

Sharma KK, Ahmed F, Schenk PM, Li Y (2015) UV-C mediated rapid carotenoid induction and settling performance of Dunaliellasalina and Haematococcuspluvialis. Biotechnology and Bioengineering 112:2106-2114. (PMS and YL contributed equally)

Duong VT, Ahmed F, Thomas-Hall SR, Quigley S, Nowak E, Schenk PM (2015) High protein- and high lipid-producing microalgae from northern Australia as potential feedstock for animal feed and biodiesel. Frontiers in Bioengineering and Biotechnology 3:53.

Sharma K, Schenk PM (2015) Rapid induction of omega-3 fatty acids (EPA) in Nannochloropsis sp. by UV-C radiation. Biotechnology and Bioengineering 112:1243–1249.

Gao Z , Meng C, Chen YC, Ahmed F, Mangott A, Schenk PM, Li Y (2015) Comparison of astaxanthin accumulation and biosynthesis gene expression of three Haematococcuspluvialisstrains upon salinity stress. Journal of Applied Phycology 27:1853–1860.

Islam MN, Alsenani F, Schenk PM (2015) Microalgae as a sustainable source of nutraceuticals. IN: Microbial Functional Foods and Nutraceuticals. V.K. Gupta (ed).Wiley-Blackwell

Duong VT, Bao B, Schenk PM (2015) Oleaginous microalgae isolation and screening for lipid productivity using a standard protocol. IN: Hydrocarbon and Lipid Microbiology Protocols. T.J. McGenity, K.N. Timmis, B. Nogales Fernández (eds). Springer Berlin Heidelberg.

Rincon-Florez VA, Carvalhais LC, Dang YP, Schenk PM (2015) Soil microbial community interactions under tillage systems in Australia. IN: Plant, Soil and Microbes: Interactions and Implications in Crop Science. K.R. Hakeem, M.S. Akhtar, S.N.A. Abdullah (eds). Springer Berlin Heidelberg.

Ghasemi Naghdi FG, Schenk PM (2015) Protocols for lipid extraction from wet algal biomass.IN: Hydrocarbon and Lipid Microbiology Protocols. T.J. McGenity, K.N. Timmis, B. Nogales Fernández (eds). Springer Berlin Heidelberg.

Alsenani F, Ahmad F, Schenk PM (2015) Nutraceuticals from microalgae. IN: Nutraceuticals and Functional Foods in Human Health and Disease Prevention, D. Bagchi (ed). CRC Press /Taylor & Francis.

Mirzaee H, Shuey L, Schenk PM (2014) Transcriptomics of plants interacting with pathogens and beneficial microbes. IN: Genomics, Proteomics and Metabolomics in Nutraceuticals and Functional Foods, D. Bagchi (ed). 2nd ed., Wiley-Interscience.

Crawford MH, Rincon-Florez V, Balzer A, Dang VP, Carvalhais LC, Liu H, Schenk PM (2014) Changes in the soil quality attributes of continuous no-till farming systems following a strategic tillage. Soil Research.

Gao Z , Meng C, Chen YC, Ahmed F, Mangott A, Schenk PM, Li Y (2014) Comparison of astaxanthin accumulation and biosynthesis gene expression of three Haematococcus pluvialis strains upon salinity stress. Journal of Applied Phycology DOI: 10.1007/s10811-014-0491-3.

Ghasemi Naghdi F, Thomas-Hall SR, Durairatnam R, Pratt S, Schenk PM (2014) Comparative effects of biomass pre-treatments for direct and indirect transesterification to enhance microalgal lipid recovery. Frontiers in Energy Research 2: 57.

Lim DKY, Schuhmann H, Sharma K, Schenk PM (2014) Isolation of high-lipid Tetraselmis suecica strains following repeated UV-C mutagenesis, FACS and high-throughput growth selection. Bioenergy Research DOI: 10.1007/s12155-014-9553-2.

Chen YC, Kidd BN, Carvalhais LC, Schenk PM (2014) Molecular defense responses in roots and the rhizosphere against Fusarium oxysporum. Plant Signaling & Behavior .

Carvalhais LC, Dennis P, Schenk PM (2014) Plant defence inducers rapidly influence the diversity of bacterial communities in a potting mix. Applied Soil Ecology 84, 1-5.

Yi Chung Chen YC, Wong CL, Muzzi F, Vlaardingerbroek I, Kidd BN, Schenk PM (2014) Root defense analyses against Fusarium oxysporum reveals new regulators to confer resistance. Scientific Reports 4, 5584.

Ahmed F, Fanning K, Netzel M, Turner W, Li Y, Schenk PM (2014) Profiling of carotenoids and antioxidant capacity of microalgae from subtropical coastal and brackish waters. Food Chemistry 165, 300–306.

Adarme-Vega TC, Thomas-Hall SR, Lim DKY, Schenk PM (2014) Effect of salinity on long chain fatty acids synthesis and associated gene expression in Tetraselmis sp. Marine Drugs 12, 3381-3398.

Sharma K, Li Y, Schenk PM (2014) UV-C-mediated lipid induction and settling, a step change towards economical microalgal biodiesel production. Green Chemistry 16, 3539–3548.

Tilbrook K, Poirier Y, Gebbie L, Schenk PM, McQualter RB, Brumbley SM (2014) Reduced peroxisomal citrate synthase activity increases substrate availability for polyhydroxyalkanoate biosynthesis in plant peroxisomes. Plant Biotechnology Journal DOI: 10.1111/pbi.12211.

Garg S, Wang L, Schenk PM (2014) Effective harvesting of low surface-hydrophobicity microalgae by froth flotation. Bioresource Technology 159:437-441.

Singh J, Rani A, Kumar P, Baranwal VK, Saroj PL, Sirohi A, Pandey AN, Schenk PM (2014) New host record of a ‘Candidatus Phytoplasma asteris’-related strain infecting peach in India. Australasian Plant Disease Notes 9:1-4.

Li Y, Ghasemi F, Garg S, Adarme-Vega TC, Thurecht KJ, Ghafor WA, Tannock S, Schenk PM (2014) A comparative study: the impact of different lipid extraction methods on current microalgal lipid research. Microbial Cell Factories 13:14.

Adarme-Vega TC, Thomas-Hall SR, Schenk PM (2014) Towards sustainable sources for omega-3 fatty acids production. Current Opinion in Biotechnology 28:14-18.

Kidd B, Kazan K, Schenk PM (2014) Transcriptome analysis of induced resistance. IN: Induced Resistance for Plant Defense: A Sustainable Approach to Crop Protection, D. R. Walters, A. C. Newton & G. D. Lyon (eds). 2nd ed., Wiley & Sons.

Adarme-Vega TC, Thomas-Hall SR, Schenk PM (2014) Optimization of polyunsaturated fatty acid production from autotrophically-grown microalgae. IN: Industrial and Applied Microbiology: Microbes in Health and Environment, N. Garg & A. Aeroneelam (eds), Nova Science Publishers, Hauppauge, USA.

Narala RR, Schenk PM (2014) Cost-saving technology for large-scale algae cultivation, harvesting and biorefinery. IN: High-Efficiency Algal Biocrude, N. R. Moheimani, M. P. McHenry, K. de Boer & P. A. Bahri (eds), Springer, New York/Heidelberg.

Schenk PM (2014) Rapid cloning of genes and promoters for functional analyses. IN: Methods in Molecular Biology: Cereal Genomics. A. Furtado & R. Henry (eds), Springer, New York/Heidelberg.

Sharma KK, Garg S, Li Y, Malekizadeh A, Schenk PM (2013) Critical analysis of current microalgae dewatering techniques. Biofuels (accepted 8 May 2013).

Li Y, Mangott A, Grierson S, Schenk PM (2013) Thinking outside of the box: potential of zooplankton for microalgae harvesting. Biofuels (accepted 8 February 2013).

Carvalhais LC, Dennis PG, Badri DV, Tyson GW, Vivanco JM, Schenk PM (2013) Activation of the jasmonic acid plant defence pathway alters the composition of rhizosphere bacterial communities. PLoS ONE 8:e56457. (IF 4.1)

Ahmed F, Fanning K, Schuhmann H, Netzel M, Schenk PM (2013) Microalgae: A valuable source of natural carotenoids with potential health benefits. IN: Carotenoids: food Sources, production and health benefits. M. Yamaguchi (ed), Nova Science Publishers, Hauppauge, USA.

Carvalhais L, Rincon V, Schenk PM (2013) Soil functional gene microarrays and applications in plant-microbe interactions IN: Microarrays: Current Technology, Innovations and Applications. Z. He (ed), Horizon Scientific Press.

Rincon-Florez VA, Carvalhais, LC, Schenk PM (2013) Culture-independent molecular tools for soil and rhizosphere microbiology. Diversity 5:581-612.

Sewelam N, Kazan K, Thomas-Hall SR, Kidd BN, Manners JM, Schenk PM (2013) Ethylene Response Factor 6 is a regulator of reactive oxygen species signaling in Arabidopsis. PLoS ONE 8:e70289.

Carvalhais LC, Muzzi F, Tan CH, Hsien-Choo J, Schenk PM (2013) Plant growth in Arabidopsis is assisted by compost-soil derived microbial communities. Frontiers in Plant Science 4:235.

Carvalhais LC, Schenk PM (2013) Sample processing and cDNA preparation for microbial metatranscriptomics in complex soil communities. Methods in Enzymology 531:251-267.

Sharma KK, Garg S, Li Y, Malekizadeh A, Schenk PM (2013) Critical analysis of current microalgae dewatering techniques. Biofuels 4:397-407.

Li Y, Mangott A, Grierson S, Schenk PM (2013) Thinking outside of the box: potential of zooplankton for microalgae harvesting. Biofuels 4:263-266.

Carvalhais LC, Dennis PG, Badri DV, Tyson GW, Vivanco JM, Schenk PM (2013) Activation of the jasmonic acid plant defence pathway alters the composition of rhizosphere bacterial communities. PLoS ONE 8:e56457.

Duong VT, Li Y, Nowak E, Schenk PM (2013) Microalgae isolation and selection for prospective biodiesel production. IN: Advances in Biofuel Production: Algae and Aquatic Plants. B. Gikonyo (ed), CRC Books, Taylor and Francis, London.

Carvalhais LC, Dennis PG, Tyson GW, Schenk PM (2013) Rhizosphere metatranscriptomics: challenges and opportunities. IN: Molecular Microbial Ecology of the Rhizosphere. F.J. de Bruijn (ed), Wiley-Blackwell, New Jersey.

Ahmed F, Fanning K, Schuhmann H, Netzel M, Schenk PM (2013) Microalgae: A valuable source of natural carotenoids with potential health benefits. IN: Carotenoids: Food Sources, Production and Health Benefits. M. Yamaguchi (ed), Nova Science Publishers, Hauppauge, USA.

Carvalhais L, Rincon V, Schenk PM (2013) Soil functional gene microarrays and applications in plant-microbe interactions IN: Microarrays: Current Technology, Innovations and Applications. Z. He (ed), Horizon Scientific Press.

Carvalhais LC, Dennis PG, Tyson GW, Schenk PM (2012) Application of metatranscriptomics to soil environments. Journal of Microbiological Methods 91:246–251. (IF 2.0)

Çevik V, Kidd BN, Zhang P, Hill C, Kiddle S, Denby KJ, Holub EB, Cahill DM, Manners JM, Schenk PM, Beynon J, Kazan K (2012) MEDIATOR 25 acts as an integrative hub for the regulation of jasmonate-responsive gene expression in Arabidopsis. Plant Physiology 112.202697. (IF 6.5)

Adarme-Vega TC, Lim DKY, Timmins M, Vernen F, Li Y, Schenk PM (2012) Microalgal biofactories: A promising approach towards sustainable omega-3 fatty acid production. Microbial Cell Factories 11:96. (IF 3.6)

Garg S, Li Y, Wang L, Schenk PM (2012) Flotation for harvesting of marine microalgae: effect of algal hydrophobicity. Bioresource Technology 102:71-81. (IF 5.0)

Duong VT, Li Y, Nowak E, Schenk PM (2012) Microalgae isolation and selection for prospective biodiesel production. Energies 5:1835-1849. (IF 1.9)

Li Y, Moheimani NR, Schenk PM (2012) Current research and perspectives of microalgal biofuels in Australia. Biofuels 3:427-439.

Lim DKY, Garg S, Timmins M, Zhang ESB, Thomas-Hall SR, Schuhmann H, Li Y, Schenk PM (2012) Isolation and evaluation of oil-producing microalgae from subtropical coastal and brackish waters. PLoS ONE 7:e40751 (IF 4.1)

Sharma KK, Schuhmann H, Schenk PM (2012) High lipid induction in microalgae for biodiesel production. Energies 5:1532-1553. (IF 1.9)

Schuhmann H, Lim DKY, Schenk PM (2012) Perspectives on metabolic engineering for increased lipid contents in microalgae. Biofuels 3:71-86.

Rahaie M, Xue GP, Schenk PM (2012) The role of transcription factors in wheat under different abiotic stresses. IN: Abiotic Stress. K. Vahdati & C. Leslie (eds), InTech, Rijeka.

Schuhmann H & Schenk PM (2012) Physiology, biochemistry and genetics of algal growth and lipid production. IN: Biofuel Crops. B.P. Singh (ed), CABI, Cambridge, USA.

Schenk PM & Carvalhais L (2012) Simultaneous gene expression analysis of plants and associated microorganisms. IN: Research Advances in Applied & Environmental Microbiology. R.M. Mohan (ed), Global Research Network, Kerala.

Ahmed F, Li Y, Schenk PM (2012) Algal biorefinery: Sustainable production of biofuels and aquaculture feed. IN: The Science of Algal Fuels: Phycology, Geology, Biophotonics, Genomics and Nanotechnology. R. Gordon & J. Seckbach (eds), Springer, Dordrecht.

Carvalhais LC, Dennis PG, Tyson GW, Schenk PM (2012) Rhizosphere metatranscriptomics: challenges and opportunities. IN: Molecular Microbial Ecology of the Rhizosphere. F.J. Bruijn (ed), Wiley-Blackwell, New Jersey.

Chi DHL & Schenk PM (2012) Proteomics and metabolomics of Musa. IN: Genetics, Genomics, and Breeding of Bananas. M. Pillay, C. Kole, G. Ude (eds), Science Publishers, New Hampshire.

Schenk PM, Carvalhais LC, Kazan K (2011) Unravelling plant-microbe interactions: can multi-species transcriptomics help? Trends in Biotechnology DOI: 10.1016/j.tibtech.2011.11.002

ML, Schenk PM, Cribb BW, Moore C, Perkins LE & Zalucki MP (2011) Is the effect of priming plants, and a functional JAR1, negligible on the foraging behaviour and development of a generalist lepidopteran Helicoverpa armigera? Entomologia Experimentalis et Applicata 141:78-87.

Kidd BN, Cahill DM, Manners JM, Schenk PM & Kazan K (2011) Diverse roles of the mediator complex in plants. Seminars in Cell and Developmental Biology 22:741-748.

Tilbrook K, Gebbie L, Schenk PM, Poirier Y & Brumbley SM (2011) Peroxisomal polyhydroxyalkanoate biosynthesis is a promising strategy for bioplastic production in high biomass crops. Plant Biotechnology Journal 9:958-969.

Schenk PM (2011) Isolation of mRNA from environmental microbial communities for metatranscriptomic analyses. IN: Handbook of Molecular Microbial Ecology I: Metagenomics and Complementary Approaches. F.J. Bruijn (ed) Wiley-Blackwell, New Jersey.

Kidd BN, Kadoo NY, Dombrecht B, Tekeoglu M, Gardiner DM, Thatcher LF, Aitken EAB, Schenk PM, Manners JM & Kazan K (2011) Auxin signaling and transport promote susceptibility to the root infecting fungal pathogen Fusarium oxysporum in Arabidopsis.Molecular Plant-Microbe Interactions 24:733-748.

Chi DHL & Schenk PM (2011) Proteomics and metabolomics of Musa. IN: Encyclopedia of Plant Genomics. C. Kole, G. Ude, M. Pillay (eds) Science Publishers, New Hampshire.

Chi DHL & Schenk PM (2011) Role of bioinformatics as a tool for Musa genomics. IN: Encyclopedia of Plant Genomics. C. Kole, G. Ude, M. Pillay (eds) Science Publishers, New Hampshire.

Pregelj L, McLanders J, Gresshoff PM & Schenk PM (2011) Isoflavone phenylpropanoid pathway transcription profiling in soybean in response to Bradyrhizobium japonicuminoculation. Functional Plant Biology 38:13-24.

Tilbrook K, Gebbie L, Schenk PM, Poirier Y & Brumbley SM (2011) Peroxisomal polyhydroxyalkanoate biosynthesis is a promising strategy for bioplastic production in high biomass crops. Plant Biotechnology Journal doi: 10.1111/j.1467-7652.2011.00600.x

Kidd BN, Kadoo NY, Dombrecht B, Tekeoglu M, Gardiner DM, Thatcher LF, Aitken EAB, Schenk PM, Manners JM & Kazan K (2011) Auxin signaling and transport promote susceptibility to the root infecting fungal pathogen Fusarium oxysporum in Arabidopsis.Molecular Plant-Microbe Interactions DOI: 10.1094/MPMI-08-10-0194

Pregelj L, McLanders J, Gresshoff PM & Schenk PM (2011) Isoflavone phenylpropanoid pathway transcription profiling in soybean in response to Bradyrhizobium japonicum inoculation.Functional Plant Biology 38:13-24.

Prentis PJ, Woolfit M, Thomas-Hall SR, Ortiz-Barrientos D, Pavasovic A, Lowe AJ & Schenk PM (2010) Massively parallel sequencing and analysis of expressed sequence tags in a successful invasive plant. Annals of Botany.

McGrath KC, Mondav R, Sintrajaya R, Slattery B, Schmidt S & Schenk PM (2010) Development of an environmental functional gene microarray for soil microbial communities. Applied and Environmental Microbiology (in press).

Lim DKY, Sharma K, Garg S & Schenk PM (2010) The race for highly productive microalgae strains. Biofuels (in press).

Rahaie M, Xue GP, Naghavi MR, Alizadeh H & Schenk PM (2010) A MYB gene from wheat (Triticum aestivum L.) is up-regulated during salt and drought stresses and differentially regulated between salt-tolerant and sensitive genotypes. Plant Cell Reports 29:835-844.

Paungfoo-Lonhienne C, Lonhienne TGA, Mudge SR, Schenk PM, Christie M, Carroll BJ & Schmidt S (2010) DNA is taken up by root hairs and pollen, and stimulates root and pollen tube growth. Plant Physiology 153:799-805.

Schenk PM (2010) Isolation of mRNA from environmental microbial communities for metatranscriptomic analyses. IN: Handbook of Molecular Microbial Ecology I: Metagenomics and Complementary Approaches. F.J. Bruijn (ed) Wiley-Blackwell, New Jersey.

Kidd BN, Aitken EA, Schenk PM, Manners JM, Kazan K (2010) Plant Mediator: Mediating the jasmonate response. Plant Signaling & Behavior Jun 24;5(6).

Chi DHL & Schenk PM (2010) Proteomics and metabolomics of Musa. IN: Encyclopedia of Plant Genomics. C. Kole, G. Ude, M. Pillay (eds) Science Publishers, New Hampshire.

Chi DHL & Schenk PM (2010) Role of bioinformatics as a tool for Musa genomics. IN: Encyclopedia of Plant Genomics. C. Kole, G. Ude, M. Pillay (eds) Science Publishers, New Hampshire.

Tilbrook K., Gnanasambandam A., Schenk P.M. & Brumbley S.M. (2009) Efficient targeting of polyhydroxybutyrate biosynthetic enzymes to plant peroxisomes requires more than three amino acids in carboxyl-terminal signal. Journal of Plant Physiology

Kidd B.N., Edgar C.I., Kumar K.K., Aitken E.A., Schenk P.M., Manners J.M. & Kazan K. (2009) The Mediator complex subunit, PFT1, is a key regulator of jasmonate-dependent defense in Arabidopsis The Plant Cell

Timmins M., Zhou W., Lim L., Thomas-Hall S.R., Hankamer B., Marx U.C., Smith S.M. & Schenk P.M. (2009) The metabolome of Chlamydomonas reinhardtii following induction of anaerobic H2 production by sulphur deprivation. Journal of Biological Chemistry

Schenk P.M., Choo J.H. & Wong C.L. (2009) Microarray analyses to study plant defence and rhizosphere-microbe interactions. CAB Reviews: Perspectives in Agriculture, Veterinary Science, Nutrition and Natural Resources 2009, 4, 045, 1-14 Invited review

Paungfoo-Lonhienne C., Schenk P.M., Lonhienne T., Brackin R., Meier S., Rentsch D. & Schmidt S. (2009) Nitrogen affects cluster root formation and expression of putative peptide transporters. Journal of Experimental Botany

Timmins M., Thomas-Hall S.R., Darling A., Zhang E., Hankamer B., Marx U.C. & Schenk P.M. (2009) Phylogenetic and molecular analysis of hydrogen-producing green algae. Journal of Experimental Botany

Sohani M.M., Schenk P.M., Schultz C. & Schmidt O. (2009) Phylogenetic and transcriptional analysis of a strictosidine synthase-like gene family in Arabidopsis thaliana reveals involvement in plant defence responses. Plant Biology 11:105-117.

Trusov Y., Sewelam N., Rookes J.E., Kunkel M., Nowak E., Schenk P.M. & Botella J.R. (2009)
Heterotrimeric G proteins-mediated resistance to necrotrophic pathogens includes mechanisms independent of salicylic acid-, jasmonic acid/ethylene- and abscisic acid-mediated defense signaling. Plant Journal 58:69-81.

Bacles C.F.E., Brooks J., Lee D.J., Schenk P.M., Lowe A. & Kremer A. (2009) Reproductive biology of Corymbia citriodora subsp. variegata and effective pollen-mediated gene flow across its native range. Southern Forests 71:125-132.

Desmond, O.J., Manners, J.M., Schenk, P.M., Maclean, D.J. & Kazan, K. (2008) Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum. Physiological and Molecular Plant Pathology 73:40-47

Nguyen A.V., Thomas-Hall S.R., Malnoe A., Timmins M., Mussgnug J.H., Rupprecht J., Kruse O., Hankamer B. & Schenk P.M. (2008) The transcriptome of photo-biological hydrogen production induced by sulphur deprivation in the green alga Chlamydomonas reinhardtii. Eukaryotic Cell 7:1965-1979.

Kunz B.A., Dando P.K., Grice D.M., Mohr P.G., Schenk P.M. & Cahill D.M. (2008) UV-induced DNA damage promotes resistance to the biotrophic pathogen Hyaloperonospora parasitica in Arabidopsis. Plant Physiology 148:1021-1031.

McGrath K.C., Thomas-Hall S., Cheng C.T., Leo L., Alexa A., Schmidt S. & Schenk, P.M. (2008) Isolation and analysis of mRNA from environmental microbial communities. Journal of Microbiological Methods 75:172-176.

Schenk P.M., Thomas-Hall S., Nguyen A.V., Malnoë A., Timmins M., Stephens E., Mussgnug J.H., Rupprecht J., Kruse O. & Hankamer B. (2008) Transcriptional profiling of photosynthetic genes during photo-biological hydrogen production in the green alga Chlamydomonas reinhardtii. Proceedings of the 17th World Hydrogen Energy Conference, Brisbane, 15-19 June.

Schenk P.M., McGrath K.C., Lorito M. & Pieterse C.M.J. (2008) Plant-microbe and plant-insect interactions meet common grounds. New Phytologist 179:251-255. (invited review)

Desmond O.J., Manners J.M., Stephens A., Maclean D.J., Schenk P.M., Gardiner D.M., Munn A.L. & Kazan K. (2008) The Fusarium mycotoxin deoxynivalenol elicits hydrogen peroxide production, programmed cell death and defence responses in wheat. Molecular Plant Pathology 9:435-445.

Schenk P.M., Thomas-Hall S.R., Stephens E., Marx U., Mussgnug J.H., Posten C., Kruse O. & Hankamer B. (2008) Second generation biofuels: High-efficiency microalgae for biodiesel production. BioEnergy Research 1:20-43. (invited review)

Paungfoo-Lonhienne C., Lonhienne T.G.A., Rentsch D., Robinson N., Christie M., Webb R.I., Gamage H.K., Carroll B.J., Schenk P.M. & Schmidt S. (2008) Plants can use protein as a nitrogen source without assistance from other organisms. Proceedings of the National Academy of Sciences USA 105:4524-4529.

McGrath K., Brackin R., Lakshmanan P., Schenk P.M. & Schmidt S. (2008). Knowledge of soil biology to reduce nitrogen loss as N2O from sugarcane farming. Proceedings of the Australian Society of Sugar Cane Technologies 28:115-126.

Schenk P.M., Thomas-Hall S., Nguyen A.V., Manners J.M., Kazan K. & Spangenberg G. (2008) Identification of plant defense genes in canola using Arabidopsis cDNA microarrays. Plant Biology 10:539-547.

Hankamer B., Schenk P., Marx U., Posten C. & Kruse O. (2007) The solar bio-fuels consortium: Developing advanced bio-fuel production systems. Photosynthesis Research 91:136.

Dombrecht B., Xue G.P., Edgar C.I., Sprague S.J., Kirkegaard J.A., Ross J.J., Reid J.B., Fitt G.P., Sewelam N., Schenk P.M., Manners J.M. & Kazan K. (2007) MYC2 differentially modulates diverse jasmonate-dependent functions in Arabidopsis. The Plant Cell 19:2225-2245.

Kazan K. & Schenk P.M. (2007) Genomics in induced resistance. IN, Induced Resistance for Plant Defence: a sustainable approach to crop protection , D. Walters, A Newton, G. Lyon (eds.) Blackwell Publishing, Oxford.

Mussgnug J.H., Thomas-Hall S., Rupprecht J., Foo A., Klassen V., McDowall A., Schenk P.M., Kruse O. and Hankamer B. (2007) Engineering photosynthetic light capture: impacts on improved solar energy to biomass conversion. Plant Biotechnology Journal 5:802-814.

Thomas-Hall S.R., Campbell P.R., Carlens K., Kawanishi E., Swennen R., Sagi L. & Schenk P.M. (2007) Phylogenetic and molecular analysis of the ribulose-1,5-bisphosphate carboxylase small subunit gene family in banana. Journal of Experimental Botany 58:2685-2697.

Vickers C.E., Schenk P.M., Li D., Mullineaux P.M., Gresshoff P.M. (2007) pGFPGUSPlus, a new binary vector for gene expression studies and optimising transformation systems in plants. Biotechnology Letters 29:1793-1796.

Nontachaiyapoom S., Scott P., Schenk P.M., Men A.E., Gresshoff P.M. (2007) Promoters of orthologous soybean and Lotus japonicus nodulation autoregulation genes interchangeably drive phloem-specific expression in transgenic plants. Molecular Plant-Microbe Interactions 20:769-780.

Remans T., Iram S., Shuey S., Jaufeerally-Fakim Y. & Schenk P.M. (2007) Banana streak virus: a highly diverse plant pararetrovirus. Plant Viruses 1: 33-38. (invited review)

Edgar C., McGrath K., Dombrecht B; Manners J.M. Maclean D.J., Schenk P.M. & Kazan K; (2006) A role for salicylate-mediated resistance to the vascular wilt pathogen Fusarium oxysporum in the model host Arabidopsis thaliana. Australasian Plant Pathology 35:581-591.

Desmond O.J., Edgar C., Manners J.M., Maclean D.J., Schenk P.M. & Kazan K. (2006): Methyl jasmonate induced gene expression in wheat delays symptom development by the crown rot pathogen Fusarium pseudograminearum. Physiological and Molecular Plant Pathology 67:171-179.

Trusov Y., Rookes J., Chakravorty D., Armour D., Schenk P.M. & Botella, J.R. (2006): Heterotrimeric G-proteins control Arabidopsis resistance to necrotrophic pathogens through amplification of jasmonate signaling. Plant Physiology 140: 210-220.

Schenk P.M., Kazan K., Rusu A., Anderson J.P., Maclean D.J. & Manners J.M. (2005): The SEN1 gene of Arabidopsis is regulated by signals that link salicylic acid-mediated plant defence and senescence. Plant Physiology and Biochemistry 43:997-1005.

Kruse O., Rupprecht J., Bader K.-P., Thomas-Hall S., Schenk P.M., Finazzi G. & Hankamer B. (2005): Improved photobiological H2 production in engineered green algal cells. Journal of Biological Chemistry 280:34170-34177.

McGrath K.C, Dombrecht B., Manners J.M., Schenk P.M., Edgar C.I., Maclean D.J., Scheible W.-R., Udvardi M.K. & Kazan K. (2005): Repressor- and activator-type ethylene response factors functioning in jasmonate signaling and disease resistance identified via a genomewide screen of Arabidopsis transcription factor gene expression. Plant Physiology 139:949-959.

Remans T., Grof C.P.L., Ebert P.R. & Schenk, P.M. (2005): Identification of functional sequences in the pregenomic RNA promoter of the Banana streak virus Cavendish strain (BSV-Cav). Virus Research 108:177-186.

Remans R., Grof C.P.L., Ebert P.R. & Schenk P.M. (2005): Functional promoter analysis using an approach based on in vitro evolution. Biotechniques 38:209-216.

Anderson J.P., Badruzsaufari, Schenk, P.M., Manners, J.M., Desmond O.J., Ehlert C., Maclean D.J., Ebert P.R. & Kazan K. (2004): Antagonistic interaction between abscisic acid and jasmonate-ethylene signaling pathways modulates defense gene expression and disease resistance. The Plant Cell 16:3460-3479.

Schenk P.M., Vickers C.E. & Manners J.M. (2004): Rapid cloning of novel genes and promoters for functional analyses in transgenic cells. Transgenics 4:151-156.

Penninckx I.A.M.A., Eggermont K., Schenk P.M., Van Den Ackerveken G., Cammue B.P.A., Thomma B.P.H.J. (2003): The Arabidopsis mutant iop1 exhibits induced over-expression of the plant defensin gene PDF1.2 and enhanced pathogen resistance. Molecular Plant Pathology 4:479-486.

Campbell E.J., Schenk P.M., Kazan K., Penninckx I.A.M.A., Anderson J.P., Maclean D.J., Cammue B.P.A., Ebert P.R., & Manners J.M. (2003): Pathogen-responsive expression of a putative ABC-transporter gene conferring resistance to the diterpenoid sclareol is regulated by multiple defense signaling pathways in Arabidopsis. Plant Physiology 133:1272-1284.

Schenk P.M., Kazan K., Manners J.M., Anderson J.P., Simpson B., Wilson I., Somerville S.C. & Maclean D.J. (2003): Systemic gene expression in Arabidopsis during an incompatible interaction with Alternaria brassicicola. Plant Physiology 132:999-1010.

Chapman S., Schenk P., Kazan K. & Manners J.M. (2002): Using biplots to interpret gene expression patterns in plants. Bioinformatics 18:202-204.

Schenk P.M., Remans T., Sági L., Elliott A.R., Dietzgen R.G., Ebert P.R., Swennen R., Grof C.P.L. & Manners J.M (2001): Promoters for pregenomic RNA of banana streak badnavirus are active for transgene expression in monocot and dicot plants. Plant Molecular Biology 47:399-412.

Kazan K., Schenk P.M., Wilson I. & Manners J.M. (2001): DNA microarrays: new tools in the analysis of plant defence responses. Molecular Plant Pathology 2:177-185.

Schenk P.M. & Ebert P.R. (2001): DNA microarrays: new tools in agricultural biotechnology. AgBiotechNet 3:ABN078 (Invited review).

Schenk P.M., Kazan K., Wilson I., Anderson J.P., Richmond T., Somerville S.C. & Manners J.M. (2000): Coordinated plant defense responses in Arabidopsis revealed by microarray analysis.Proceedings of the National Academy of Sciences, USA 97:11655-11660.